myImageLib

File reading

dirrec(path, filename)	Recursively look for all the directories of files with name filename.
readdata(folder[, ext, mode])	Wrapper of dirrec(), but easier to use when reading one type of files in a given folder.

Image processing

bpass(*args)	Apply bandpass filter on images.
to8bit(img16)	Enhance contrast and convert to 8-bit.
match_hist(im1, im2)	Match the histogram of im1 to that of im2
matlab_style_gauss2D([shape, sigma])	Generate a 2D gaussian mask - should give the same result as MATLAB's fspecial('gaussian',[shape],[sigma]).

Tools

bestcolor(n)	Default plot color scheme of Matplotlib and Matlab.
wowcolor(n)	WOW class color scheme, used in my density fluctuations paper.
show_progress(progress[, label, bar_length])	Display a progress bar in command line environment, which looks like
gauss1(x, a, x0, sigma, b)	1-d gaussian function.
xy_bin(xo, yo[, n, mode, bins])	Bin x, y data on log or linear scale

corrTrack

normxcorr2(template, image[, mode])	Compute normalized cross-correlation map between an image and a template.
FastPeakFind(data)	Detect peak in 2D images.
maxk(array, num_max)	Sort a numerical array and return the maximum num_max elements.
minimal_peakfind(img)	Minimal version of myImageLib.FastPeakFind().
track_spheres_dt(img, num_particles)	Use correlation tracking method to find spheres in an image.

Classes

rawImage(file_dir)

This class converts raw images to tif sequences.